Preheat oven to 375 degrees F. Line a baking sheet with parchment paper or spray with nonstick cooking spray.
In a large mixing bowl or stand mixer, combine applesauce, sweetener, lemon extract, egg and lemon juice.
Add Kodiak Cakes, pudding mix and protein powder; mix until fully incorporated. Fold in chocolate chips.
Drop heaping Tablespoons of dough, two inches apart, onto prepared baking sheet using a cookie scoop (approx. 1.4 ounces each). Bake for 8-10 minutes, or until set.